| ADDITIONAL_ISOTOPES | TOPPMetaProSIP | protected |
| calculateCorrelation(Size n_element, const vector< double > &isotopic_intensities, IsotopePatterns patterns, MapRateToScoreType &map_rate_to_correlation_score, String labeling_element, double mass, double min_correlation_distance_to_averagine) | TOPPMetaProSIP | inlineprotected |
| calculateGlobalLR(const vector< double > &isotopic_intensities) | TOPPMetaProSIP | inlineprotected |
| extractIncorporationsAtCorrelationMaxima(SIPPeptide &sip_peptide, const IsotopePatterns &patterns, double weight_merge_window=5.0, double min_corr_threshold=0.5, double min_decomposition_weight=10.0) | TOPPMetaProSIP | inlineprotected |
| extractIncorporationsAtHeighestDecompositionWeights(SIPPeptide &sip_peptide, const IsotopePatterns &patterns, double weight_merge_window=5.0, double min_corr_threshold=0.5, double min_low_RIA_threshold=-1, double min_decomposition_weight=10.0) | TOPPMetaProSIP | inlineprotected |
| extractIsotopicIntensities(Size element_count, double mass_diff, double mz_tolerance_ppm, double seed_rt, double seed_mz, double seed_charge, const MSExperiment< Peak1D > &peak_map) | TOPPMetaProSIP | inlineprotected |
| extractPeakSpectrum(Size element_count, double mass_diff, double rt, double feature_hit_theoretical_mz, Int feature_hit_charge, const MSExperiment<> &peak_map) | TOPPMetaProSIP | inlineprotected |
| FEATURE_STRING | TOPPMetaProSIP | protected |
| filterIsotopicIntensities(vector< double >::const_iterator &pattern_begin, vector< double >::const_iterator &pattern_end, vector< double >::const_iterator &intensities_begin, vector< double >::const_iterator &intensities_end, double TIC_threshold=0.99) | TOPPMetaProSIP | inlineprotected |
| findApexRT(const FeatureMap::iterator feature_it, double hit_rt, const MSExperiment< Peak1D > &peak_map, Size n_scans) | TOPPMetaProSIP | inlineprotected |
| getBestRateScorePair(const MapRateToScoreType &map_rate_to_score, double &best_rate, double &best_score) | TOPPMetaProSIP | inlineprotected |
| isotopicIntensitiesToSpectrum(double mz_start, double mass_diff, Int charge, vector< double > isotopic_intensities) | TOPPMetaProSIP | inlineprotected |
| main_(int, const char **) | TOPPMetaProSIP | inlineprotected |
| mergeSpectra(const MSExperiment<> &to_merge) | TOPPMetaProSIP | inlineprotected |
| normalizeToMax(const MapRateToScoreType &map_rate_to_decomposition_weight) | TOPPMetaProSIP | inlineprotected |
| registerOptionsAndFlags_() | TOPPMetaProSIP | inlineprotected |
| TOPPMetaProSIP() | TOPPMetaProSIP | inline |
| UNASSIGNED_ID_STRING | TOPPMetaProSIP | protected |
| UNIDENTIFIED_STRING | TOPPMetaProSIP | protected |
| writePeakIntensities_(SVOutStream &out_stream, vector< double > isotopic_intensities, bool write_13Cpeaks) | TOPPMetaProSIP | inlineprotected |